Installation of uap¶
The installation requires Python’s virtualenv. It is a tool to create isolated Python environments. So, please install it if its not already installed.:
$ sudo apt-get install python-virtualenv OR $ sudo pip install virtualenv
The uap installation does not include all necessary tools for the data analysis. It is expected that the required tools are already installed.
Downloading the Software¶
Download the software from uap's github repository. like this:
$ git clone https://github.com/kmpf/uap.git
Setting Up Python Environment¶
After cloning the repository, change into the created directory and run the
$ cd uap $ ./bootstrap.sh
The script creates the required Python environment (which will be located in
Afterwards it installs PyYAML, NumPy, biopython and psutil
into the freshly created environment.
There is no harm in accidentally running this script multiple times.
Making uap Globally Available¶
uap can be used globally.
On Unix-type operating systems it is advised to add the installation path to
Therefore change into the uap directory and execute:
Copy the output and add a line to your
like the following and replace
<uap-path> with the copied output:
Finally, make the changes known to your environment by sourcing the changed file:
$ source ~/.bashrc $ source ~/.bash_profile